IL_7SYO_101

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYO_101 not in the Motif Atlas

Geometric match to IL_8C3A_396

Geometric discrepancy: 0.2808

The information below is about IL_8C3A_396

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58310.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

7SYO|1|2|G|1108
7SYO|1|2|C|1109
7SYO|1|2|G|1110
*
7SYO|1|2|C|1123
7SYO|1|2|C|1124

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

uS2 (SA)

Chain C

eS1

Chain S

eS17

Chain c

eS27