IL_7SYO_120

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYO_120 not in the Motif Atlas

Geometric match to IL_1CSL_001

Geometric discrepancy: 0.3351

The information below is about IL_1CSL_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59580.1

Basepair signature

cWW-cHW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7SYO|1|2|C|1713
7SYO|1|2|U|1714
7SYO|1|2|A|1715
7SYO|1|2|C|1716
*
7SYO|1|2|G|1817
7SYO|1|2|A|1818
7SYO|1|2|A|1819
7SYO|1|2|G|1820

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain n

eL41