IL_7SYP_003

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

7SYP|1|2|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYP_003 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3465

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

7SYP|1|2|C|37
7SYP|1|2|A|38
7SYP|1|2|A|39
7SYP|1|2|A|40
*
7SYP|1|2|U|514
7SYP|1|2|G|515
7SYP|1|2|A|516
7SYP|1|2|C|517
7SYP|1|2|G|518

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain K

uS4