IL_7SYP_013

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7SYP|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYP_013 not in the Motif Atlas

Geometric match to IL_4V88_394

Geometric discrepancy: 0.1652

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7SYP|1|2|G|145
7SYP|1|2|G|146
7SYP|1|2|A|147
7SYP|1|2|U|148
7SYP|1|2|A|149
7SYP|1|2|A|150
7SYP|1|2|C|151
*
7SYP|1|2|G|167
7SYP|1|2|C|168
7SYP|1|2|U|169
7SYP|1|2|A|170
7SYP|1|2|A|171
7SYP|1|2|U|172
7SYP|1|2|A|173
7SYP|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

eS24