IL_7SYP_026

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

7SYP|1|2|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYP_026 not in the Motif Atlas

Geometric match to IL_4LFB_014

Geometric discrepancy: 0.1339

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

7SYP|1|2|U|487
7SYP|1|2|U|488
7SYP|1|2|A|489
*
7SYP|1|2|U|511
7SYP|1|2|A|512

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain K

uS4

Chain Z

eS24