IL_7SYP_036

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7SYP|1|2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYP_036 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1844

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

7SYP|1|2|G|665
7SYP|1|2|U|666
7SYP|1|2|U|667
7SYP|1|2|A|668
7SYP|1|2|A|669
7SYP|1|2|A|670
7SYP|1|2|A|671
*
7SYP|1|2|U|1161
7SYP|1|2|C|1162

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5

Chain Y

uS12

Chain b

eS26