IL_7SYP_043

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAAAAAAUU*ACCGCAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYP_043 not in the Motif Atlas

Geometric match to IL_4V88_425

Geometric discrepancy: 0.2613

The information below is about IL_4V88_425

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53064.1

Basepair signature

cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7SYP|1|2|G|807
7SYP|1|2|A|808
7SYP|1|2|A|809
7SYP|1|2|A|810
7SYP|1|2|A|811
7SYP|1|2|A|812
7SYP|1|2|A|813
7SYP|1|2|U|814
7SYP|1|2|U|815
*
7SYP|1|2|A|849
7SYP|1|2|C|850
7SYP|1|2|C|851
7SYP|1|2|G|852
7SYP|1|2|C|853
7SYP|1|2|A|854
7SYP|1|2|G|855
7SYP|1|2|C|856

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain K

uS4

Chain M

uS17

Chain X

uS8