IL_7SYP_054

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYP_054 not in the Motif Atlas

Geometric match to IL_6CZR_145

Geometric discrepancy: 0.1518

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7SYP|1|2|C|1047
7SYP|1|2|G|1048
7SYP|1|2|A|1049
7SYP|1|2|A|1050
7SYP|1|2|G|1051
*
7SYP|1|2|C|1067
7SYP|1|2|G|1068
7SYP|1|2|U|1069
7SYP|1|2|A|1070
7SYP|1|2|G|1071

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain b

eS26