IL_7SYP_059

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYP_059 not in the Motif Atlas

Geometric match to IL_4V88_440

Geometric discrepancy: 0.1229

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7SYP|1|2|G|1168
7SYP|1|2|G|1169
7SYP|1|2|A|1170
7SYP|1|2|G|1171
7SYP|1|2|U|1172
7SYP|1|2|A|1173
7SYP|1|2|U|1174
7SYP|1|2|G|1175
*
7SYP|1|2|U|1186
7SYP|1|2|G|1187
7SYP|1|2|A|1188
7SYP|1|2|A|1189
7SYP|1|2|A|1190
7SYP|1|2|C|1191

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain n

eL41