IL_7SYQ_013

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7SYQ|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYQ_013 not in the Motif Atlas

Geometric match to IL_4V88_394

Geometric discrepancy: 0.1688

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7SYQ|1|2|G|145
7SYQ|1|2|G|146
7SYQ|1|2|A|147
7SYQ|1|2|U|148
7SYQ|1|2|A|149
7SYQ|1|2|A|150
7SYQ|1|2|C|151
*
7SYQ|1|2|G|167
7SYQ|1|2|C|168
7SYQ|1|2|U|169
7SYQ|1|2|A|170
7SYQ|1|2|A|171
7SYQ|1|2|U|172
7SYQ|1|2|A|173
7SYQ|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

eS24