IL_7SYQ_032
3D structure
- PDB id
- 7SYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGGGCAAGUC*GCU
- Length
- 13 nucleotides
- Bulged bases
- 7SYQ|1|2|U|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYQ_032 not in the Motif Atlas
- Geometric match to IL_5M0H_002
- Geometric discrepancy: 0.2371
- The information below is about IL_5M0H_002
- Detailed Annotation
- Multiple bulged bases, near cWW
- Broad Annotation
- Multiple bulged bases, near cWW
- Motif group
- IL_70707.3
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 70
Unit IDs
7SYQ|1|2|A|599
7SYQ|1|2|G|600
7SYQ|1|2|G|601
7SYQ|1|2|G|602
7SYQ|1|2|C|603
7SYQ|1|2|A|604
7SYQ|1|2|A|605
7SYQ|1|2|G|606
7SYQ|1|2|U|607
7SYQ|1|2|C|608
*
7SYQ|1|2|G|635
7SYQ|1|2|C|636
7SYQ|1|2|U|637
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- uS5
- Chain E
- uS3
- Chain K
- uS4
- Chain Y
- uS12
- Chain f
- eS30
- Chain z
- Internal ribosome entry site; IRES
Coloring options: