IL_7SYQ_035

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7SYQ|1|2|A|668, 7SYQ|1|2|A|669, 7SYQ|1|2|A|670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYQ_035 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1913

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

7SYQ|1|2|G|665
7SYQ|1|2|U|666
7SYQ|1|2|U|667
7SYQ|1|2|A|668
7SYQ|1|2|A|669
7SYQ|1|2|A|670
7SYQ|1|2|A|671
*
7SYQ|1|2|U|1161
7SYQ|1|2|C|1162

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain b

eS26