IL_7SYQ_042

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAAAAAUU*ACCGCAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYQ_042 not in the Motif Atlas

Geometric match to IL_4V88_425

Geometric discrepancy: 0.2528

The information below is about IL_4V88_425

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53064.1

Basepair signature

cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7SYQ|1|2|G|807
7SYQ|1|2|A|808
7SYQ|1|2|A|809
7SYQ|1|2|A|810
7SYQ|1|2|A|811
7SYQ|1|2|A|812
7SYQ|1|2|A|813
7SYQ|1|2|U|814
7SYQ|1|2|U|815
*
7SYQ|1|2|A|849
7SYQ|1|2|C|850
7SYQ|1|2|C|851
7SYQ|1|2|G|852
7SYQ|1|2|C|853
7SYQ|1|2|A|854
7SYQ|1|2|G|855
7SYQ|1|2|C|856

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain K

uS4

Chain M

uS17

Chain X

uS8