IL_7SYQ_051

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

7SYQ|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYQ_051 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.266

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7SYQ|1|2|G|952
7SYQ|1|2|C|953
7SYQ|1|2|U|954
7SYQ|1|2|A|955
7SYQ|1|2|G|956
*
7SYQ|1|2|C|967
7SYQ|1|2|U|968
7SYQ|1|2|U|969
7SYQ|1|2|G|970
7SYQ|1|2|G|971
7SYQ|1|2|A|972
7SYQ|1|2|C|973
7SYQ|1|2|C|974

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain P

uS11