IL_7SYQ_056
3D structure
- PDB id
- 7SYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCGU*ACC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYQ_056 not in the Motif Atlas
- Geometric match to IL_4V88_411
- Geometric discrepancy: 0.3704
- The information below is about IL_4V88_411
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_46796.2
- Basepair signature
- cWW-tHS-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7SYQ|1|2|G|1108
7SYQ|1|2|C|1109
7SYQ|1|2|G|1110
7SYQ|1|2|U|1111
*
7SYQ|1|2|A|1122
7SYQ|1|2|C|1123
7SYQ|1|2|C|1124
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain B
- uS2 (SA)
- Chain C
- eS1
- Chain S
- eS17
- Chain c
- eS27
- Chain z
- Internal ribosome entry site; IRES
Coloring options: