IL_7SYQ_071

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

7SYQ|1|2|C|1403, 7SYQ|1|2|U|1404, 7SYQ|1|2|U|1442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYQ_071 not in the Motif Atlas

Geometric match to IL_4V88_456

Geometric discrepancy: 0.3367

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

7SYQ|1|2|A|1402
7SYQ|1|2|C|1403
7SYQ|1|2|U|1404
7SYQ|1|2|A|1405
*
7SYQ|1|2|U|1441
7SYQ|1|2|U|1442
7SYQ|1|2|C|1443
7SYQ|1|2|U|1444

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain V

uS10

Chain h

Receptor for Activated C Kinase 1 (RACK1)