IL_7SYQ_111

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYQ_111 not in the Motif Atlas

Homologous match to IL_8P9A_412

Geometric discrepancy: 0.1671

The information below is about IL_8P9A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

7SYQ|1|2|A|802
7SYQ|1|2|C|803
*
7SYQ|1|2|G|860
7SYQ|1|2|A|861
7SYQ|1|2|A|862
7SYQ|1|2|U|863

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

eS7

Chain M

uS17

Chain X

uS8