IL_7SYR_013

3D structure

PDB id

7SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7SYR|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYR_013 not in the Motif Atlas

Geometric match to IL_5J7L_012

Geometric discrepancy: 0.1874

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7SYR|1|2|G|145
7SYR|1|2|G|146
7SYR|1|2|A|147
7SYR|1|2|U|148
7SYR|1|2|A|149
7SYR|1|2|A|150
7SYR|1|2|C|151
*
7SYR|1|2|G|167
7SYR|1|2|C|168
7SYR|1|2|U|169
7SYR|1|2|A|170
7SYR|1|2|A|171
7SYR|1|2|U|172
7SYR|1|2|A|173
7SYR|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

eS24