3D structure

PDB id
7SYR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CGAU*GCAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7SYR_055 not in the Motif Atlas
Geometric match to IL_4V88_438
Geometric discrepancy: 0.1735
The information below is about IL_4V88_438
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

7SYR|1|2|C|1098
7SYR|1|2|G|1099
7SYR|1|2|A|1100
7SYR|1|2|U|1101
*
7SYR|1|2|G|1131
7SYR|1|2|C|1132
7SYR|1|2|A|1133
7SYR|1|2|G|1134

Current chains

Chain 2
18S rRNA

Nearby chains

Chain B
uS2 (SA)
Chain C
eS1
Chain O
uS15
Chain S
eS17
Chain b
eS26

Coloring options:


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