IL_7SYR_059

3D structure

PDB id

7SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUG*UACA

Length

7 nucleotides

Bulged bases

7SYR|1|2|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYR_059 not in the Motif Atlas

Geometric match to IL_4KYY_002

Geometric discrepancy: 0.2478

The information below is about IL_4KYY_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

7SYR|1|2|U|1202
7SYR|1|2|U|1203
7SYR|1|2|G|1204
*
7SYR|1|2|U|1694
7SYR|1|2|A|1695
7SYR|1|2|C|1696
7SYR|1|2|A|1697

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5

Chain b

eS26