IL_7SYR_085

3D structure

PDB id

7SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

7SYR|1|2|U|1721

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYR_085 not in the Motif Atlas

Geometric match to IL_4V88_469

Geometric discrepancy: 0.3623

The information below is about IL_4V88_469

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7SYR|1|2|U|1720
7SYR|1|2|U|1721
7SYR|1|2|G|1722
*
7SYR|1|2|U|1812
7SYR|1|2|A|1813

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12