IL_7SYR_111

3D structure

PDB id

7SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUACG*CGCGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYR_111 not in the Motif Atlas

Geometric match to IL_9JA9_001

Geometric discrepancy: 0.3133

The information below is about IL_9JA9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.5

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

7SYR|1|2|C|1559
7SYR|1|2|U|1560
7SYR|1|2|A|1561
7SYR|1|2|C|1562
7SYR|1|2|G|1563
*
7SYR|1|2|C|1572
7SYR|1|2|G|1573
7SYR|1|2|C|1574
7SYR|1|2|G|1575
7SYR|1|2|G|1576

Current chains

Chain 2

18S rRNA

Nearby chains

Chain U

eS19