IL_7SYS_013

3D structure

PDB id

7SYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7SYS|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYS_013 not in the Motif Atlas

Geometric match to IL_4V88_394

Geometric discrepancy: 0.1591

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7SYS|1|2|G|145
7SYS|1|2|G|146
7SYS|1|2|A|147
7SYS|1|2|U|148
7SYS|1|2|A|149
7SYS|1|2|A|150
7SYS|1|2|C|151
*
7SYS|1|2|G|167
7SYS|1|2|C|168
7SYS|1|2|U|169
7SYS|1|2|A|170
7SYS|1|2|A|171
7SYS|1|2|U|172
7SYS|1|2|A|173
7SYS|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

eS24