IL_7SYS_035

3D structure

PDB id

7SYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7SYS|1|2|A|668, 7SYS|1|2|A|669, 7SYS|1|2|A|670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYS_035 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1616

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

7SYS|1|2|G|665
7SYS|1|2|U|666
7SYS|1|2|U|667
7SYS|1|2|A|668
7SYS|1|2|A|669
7SYS|1|2|A|670
7SYS|1|2|A|671
*
7SYS|1|2|U|1161
7SYS|1|2|C|1162

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain b

eS26