IL_7SYS_056
3D structure
- PDB id
- 7SYS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYS_056 not in the Motif Atlas
- Geometric match to IL_4V88_438
- Geometric discrepancy: 0.1524
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7SYS|1|2|C|1098
7SYS|1|2|G|1099
7SYS|1|2|A|1100
7SYS|1|2|U|1101
*
7SYS|1|2|G|1131
7SYS|1|2|C|1132
7SYS|1|2|A|1133
7SYS|1|2|G|1134
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain B
- uS2 (SA)
- Chain C
- eS1
- Chain O
- uS15
- Chain S
- eS17
- Chain b
- eS26
Coloring options: