IL_7SYS_085

3D structure

PDB id

7SYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

7SYS|1|2|U|1721

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYS_085 not in the Motif Atlas

Homologous match to IL_8C3A_476

Geometric discrepancy: 0.5252

The information below is about IL_8C3A_476

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

7SYS|1|2|U|1720
7SYS|1|2|U|1721
7SYS|1|2|G|1722
*
7SYS|1|2|U|1812
7SYS|1|2|A|1813

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12