IL_7SYS_090

3D structure

PDB id

7SYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYS_090 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.129

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7SYS|1|2|C|1742
7SYS|1|2|G|1743
7SYS|1|2|G|1744
7SYS|1|2|A|1745
7SYS|1|2|U|1746
*
7SYS|1|2|A|1788
7SYS|1|2|G|1789
7SYS|1|2|A|1790
7SYS|1|2|A|1791
7SYS|1|2|G|1792

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain J

eS8