IL_7SYS_101

3D structure

PDB id

7SYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGCC*GAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYS_101 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.2715

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

7SYS|1|2|C|927
7SYS|1|2|G|928
7SYS|1|2|G|929
7SYS|1|2|C|930
7SYS|1|2|C|931
*
7SYS|1|2|G|1010
7SYS|1|2|A|1011
7SYS|1|2|A|1012
7SYS|1|2|U|1013
7SYS|1|2|G|1014

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain O

uS15

Chain c

eS27