IL_7SYT_028

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AUA*UAAU

Length

7 nucleotides

Bulged bases

7SYT|1|2|A|555

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYT_028 not in the Motif Atlas

Geometric match to IL_7A0S_092

Geometric discrepancy: 0.3335

The information below is about IL_7A0S_092

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

7SYT|1|2|A|529
7SYT|1|2|U|530
7SYT|1|2|A|531
*
7SYT|1|2|U|553
7SYT|1|2|A|554
7SYT|1|2|A|555
7SYT|1|2|U|556

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain f

eS30