IL_7SYT_031

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GUCCA*UUAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYT_031 not in the Motif Atlas

Geometric match to IL_4V88_422

Geometric discrepancy: 0.3507

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7SYT|1|2|G|565
7SYT|1|2|U|566
7SYT|1|2|C|567
7SYT|1|2|C|568
7SYT|1|2|A|569
*
7SYT|1|2|U|581
7SYT|1|2|U|582
7SYT|1|2|A|583
7SYT|1|2|A|584
7SYT|1|2|C|585

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Z

40S ribosomal protein S24