IL_7SYT_035

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7SYT|1|2|A|668, 7SYT|1|2|A|669, 7SYT|1|2|A|670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYT_035 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1592

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

7SYT|1|2|G|665
7SYT|1|2|U|666
7SYT|1|2|U|667
7SYT|1|2|A|668
7SYT|1|2|A|669
7SYT|1|2|A|670
7SYT|1|2|A|671
*
7SYT|1|2|U|1161
7SYT|1|2|C|1162

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain b

eS26 (S26)