IL_7SYT_051

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

7SYT|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYT_051 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.2315

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7SYT|1|2|G|952
7SYT|1|2|C|953
7SYT|1|2|U|954
7SYT|1|2|A|955
7SYT|1|2|G|956
*
7SYT|1|2|C|967
7SYT|1|2|U|968
7SYT|1|2|U|969
7SYT|1|2|G|970
7SYT|1|2|G|971
7SYT|1|2|A|972
7SYT|1|2|C|973
7SYT|1|2|C|974

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain P

uS11