IL_7SYT_058

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYT_058 not in the Motif Atlas

Geometric match to IL_4V88_440

Geometric discrepancy: 0.1267

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7SYT|1|2|G|1168
7SYT|1|2|G|1169
7SYT|1|2|A|1170
7SYT|1|2|G|1171
7SYT|1|2|U|1172
7SYT|1|2|A|1173
7SYT|1|2|U|1174
7SYT|1|2|G|1175
*
7SYT|1|2|U|1186
7SYT|1|2|G|1187
7SYT|1|2|A|1188
7SYT|1|2|A|1189
7SYT|1|2|A|1190
7SYT|1|2|C|1191

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain n

60s ribosomal protein l41