IL_7SYT_104
3D structure
- PDB id
- 7SYT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 7SYT|1|2|G|1285
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYT_104 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.3599
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7SYT|1|2|G|1281
7SYT|1|2|A|1282
7SYT|1|2|C|1283
7SYT|1|2|A|1284
7SYT|1|2|G|1285
7SYT|1|2|G|1286
7SYT|1|2|A|1287
7SYT|1|2|U|1288
7SYT|1|2|U|1289
7SYT|1|2|G|1290
*
7SYT|1|2|C|1309
7SYT|1|2|U|1310
7SYT|1|2|C|1311
7SYT|1|2|G|1312
7SYT|1|2|A|1313
7SYT|1|2|U|1314
7SYT|1|2|U|1315
7SYT|1|2|C|1316
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain L
- S10_plectin domain-containing protein
- Chain N
- eS12
- Chain e
- eS29
- Chain g
- 40S ribosomal protein S27a
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