IL_7SYU_013

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7SYU|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYU_013 not in the Motif Atlas

Geometric match to IL_4V88_394

Geometric discrepancy: 0.1711

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7SYU|1|2|G|145
7SYU|1|2|G|146
7SYU|1|2|A|147
7SYU|1|2|U|148
7SYU|1|2|A|149
7SYU|1|2|A|150
7SYU|1|2|C|151
*
7SYU|1|2|G|167
7SYU|1|2|C|168
7SYU|1|2|U|169
7SYU|1|2|A|170
7SYU|1|2|A|171
7SYU|1|2|U|172
7SYU|1|2|A|173
7SYU|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

40S ribosomal protein S24