IL_7SYU_024

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGGA*UACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYU_024 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.2819

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7SYU|1|2|G|436
7SYU|1|2|G|437
7SYU|1|2|G|438
7SYU|1|2|A|439
*
7SYU|1|2|U|454
7SYU|1|2|A|455
7SYU|1|2|C|456
7SYU|1|2|C|457

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain J

eS8