IL_7SYU_029

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AUA*UAAU

Length

7 nucleotides

Bulged bases

7SYU|1|2|A|555

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYU_029 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.3424

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

7SYU|1|2|A|529
7SYU|1|2|U|530
7SYU|1|2|A|531
*
7SYU|1|2|U|553
7SYU|1|2|A|554
7SYU|1|2|A|555
7SYU|1|2|U|556

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain f

eS30