IL_7SYU_036

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7SYU|1|2|A|668, 7SYU|1|2|A|669, 7SYU|1|2|A|670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYU_036 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1547

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

7SYU|1|2|G|665
7SYU|1|2|U|666
7SYU|1|2|U|667
7SYU|1|2|A|668
7SYU|1|2|A|669
7SYU|1|2|A|670
7SYU|1|2|A|671
*
7SYU|1|2|U|1161
7SYU|1|2|C|1162

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain b

eS26 (S26)