IL_7SYU_057

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYU_057 not in the Motif Atlas

Geometric match to IL_4LFB_034

Geometric discrepancy: 0.1051

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7SYU|1|2|G|1168
7SYU|1|2|G|1169
7SYU|1|2|A|1170
7SYU|1|2|G|1171
7SYU|1|2|U|1172
7SYU|1|2|A|1173
7SYU|1|2|U|1174
7SYU|1|2|G|1175
*
7SYU|1|2|U|1186
7SYU|1|2|G|1187
7SYU|1|2|A|1188
7SYU|1|2|A|1189
7SYU|1|2|A|1190
7SYU|1|2|C|1191

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain n

60s ribosomal protein l41