IL_7SYU_068

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

7SYU|1|2|A|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYU_068 not in the Motif Atlas

Geometric match to IL_4WF9_006

Geometric discrepancy: 0.2395

The information below is about IL_4WF9_006

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

7SYU|1|2|C|1337
7SYU|1|2|G|1338
*
7SYU|1|2|C|1488
7SYU|1|2|A|1489
7SYU|1|2|G|1490

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5 (S2)

Chain E

uS3

Chain V

uS10

Chain e

eS29

Chain z

Internal ribosome entry site; IRES