IL_7SYU_097
3D structure
- PDB id
- 7SYU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GUCCA*UUAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYU_097 not in the Motif Atlas
- Geometric match to IL_9JA9_001
- Geometric discrepancy: 0.3604
- The information below is about IL_9JA9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.5
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
7SYU|1|2|G|565
7SYU|1|2|U|566
7SYU|1|2|C|567
7SYU|1|2|C|568
7SYU|1|2|A|569
*
7SYU|1|2|U|581
7SYU|1|2|U|582
7SYU|1|2|A|583
7SYU|1|2|A|584
7SYU|1|2|C|585
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain K
- uS4
- Chain Z
- 40S ribosomal protein S24
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