IL_7SYU_110

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

7SYU|1|2|A|1824, 7SYU|1|2|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYU_110 not in the Motif Atlas

Homologous match to IL_8CRE_469

Geometric discrepancy: 0.4781

The information below is about IL_8CRE_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73099.1

Basepair signature

cWW-cHW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

7SYU|1|2|C|1708
7SYU|1|2|G|1709
7SYU|1|2|C|1710
7SYU|1|2|U|1711
*
7SYU|1|2|A|1822
7SYU|1|2|A|1823
7SYU|1|2|A|1824
7SYU|1|2|A|1825
7SYU|1|2|G|1826

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain n

60s ribosomal protein l41

Chain z

Internal ribosome entry site; IRES