IL_7SYV_022

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUCGAUG*CAUG

Length

12 nucleotides

Bulged bases

7SYV|1|2|U|368, 7SYV|1|2|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYV|1|2|U|366
7SYV|1|2|U|367
7SYV|1|2|U|368
7SYV|1|2|C|369
7SYV|1|2|G|370
7SYV|1|2|A|371
7SYV|1|2|U|372
7SYV|1|2|G|373
*
7SYV|1|2|C|391
7SYV|1|2|A|392
7SYV|1|2|U|393
7SYV|1|2|G|394

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8

Chain M

uS17