IL_7SYV_095

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYV|1|z|C|255
7SYV|1|z|G|256
7SYV|1|z|A|257
7SYV|1|z|G|258
7SYV|1|z|U|259
7SYV|1|z|A|260
7SYV|1|z|G|261
*
7SYV|1|z|C|272
7SYV|1|z|G|273
7SYV|1|z|A|274
7SYV|1|z|A|275
7SYV|1|z|A|276
7SYV|1|z|G|277

Current chains

Chain z

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA