IL_7SYV_097
3D structure
- PDB id
- 7SYV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUCCA*UUAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYV_097 not in the Motif Atlas
- Geometric match to IL_9JA9_001
- Geometric discrepancy: 0.3674
- The information below is about IL_9JA9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.6
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
7SYV|1|2|G|565
7SYV|1|2|U|566
7SYV|1|2|C|567
7SYV|1|2|C|568
7SYV|1|2|A|569
*
7SYV|1|2|U|581
7SYV|1|2|U|582
7SYV|1|2|A|583
7SYV|1|2|A|584
7SYV|1|2|C|585
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain K
- uS4
- Chain Z
- 40S ribosomal protein S24
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