IL_7SYW_087

3D structure

PDB id

7SYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYW_087 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.149

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7SYW|1|2|C|1742
7SYW|1|2|G|1743
7SYW|1|2|G|1744
7SYW|1|2|A|1745
7SYW|1|2|U|1746
*
7SYW|1|2|A|1788
7SYW|1|2|G|1789
7SYW|1|2|A|1790
7SYW|1|2|A|1791
7SYW|1|2|G|1792

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain J

eS8