IL_7SYW_095

3D structure

PDB id

7SYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUA*UAAU

Length

7 nucleotides

Bulged bases

7SYW|1|2|A|555

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYW_095 not in the Motif Atlas

Geometric match to IL_8C3A_472

Geometric discrepancy: 0.3594

The information below is about IL_8C3A_472

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

7SYW|1|2|A|529
7SYW|1|2|U|530
7SYW|1|2|A|531
*
7SYW|1|2|U|553
7SYW|1|2|A|554
7SYW|1|2|A|555
7SYW|1|2|U|556

Current chains

Chain 2

18S rRNA

Nearby chains

Chain f

eS30