IL_7SYW_109

3D structure

PDB id

7SYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGGUUC*GUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYW_109 not in the Motif Atlas

Homologous match to IL_8CRE_437

Geometric discrepancy: 0.2081

The information below is about IL_8CRE_437

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31359.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7SYW|1|2|A|1042
7SYW|1|2|G|1043
7SYW|1|2|G|1044
7SYW|1|2|U|1045
7SYW|1|2|U|1046
7SYW|1|2|C|1047
*
7SYW|1|2|G|1071
7SYW|1|2|U|1072
7SYW|1|2|U|1073

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain b

40S ribosomal protein S26