IL_7SYW_110

3D structure

PDB id

7SYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

7SYW|1|2|C|1403, 7SYW|1|2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYW_110 not in the Motif Atlas

Homologous match to IL_8CRE_481

Geometric discrepancy: 0.4241

The information below is about IL_8CRE_481

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.2

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

3

Unit IDs

7SYW|1|2|A|1402
7SYW|1|2|C|1403
7SYW|1|2|U|1404
7SYW|1|2|A|1405
*
7SYW|1|2|U|1441
7SYW|1|2|U|1442
7SYW|1|2|C|1443
7SYW|1|2|U|1444

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain V

uS10

Chain h

RACK1