Motif IL_78800.4 Version IL_78800.4 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-3 | 1-6 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8CRE_481 | 8CRE | 0.1235 | 2 | CM | SSU rRNA | U | 1363 | U | 1364 | C | 1365 | U | 1366 | * | A | 1330 | A | 1333 | cSH | ncWW | cWW |
| 2 | IL_9PN5_213 | 9PN5 | 0.0000 | 2 | B5 | SSU rRNA | U | 1377 | U | 1378 | C | 1379 | U | 1380 | * | A | 1345 | A | 1348 | ncSH | cWW | cWW |
| 3 | IL_9H3G_226 | 9H3G | 0.0655 | 2 | h1 | SSU rRNA | U | 1380 | OMU | 1381 | C | 1382 | U | 1383 | * | A | 1346 | A | 1349 | ncSH | cWW | cWW |
| 4 | IL_8GLP_266 | 8GLP | 0.0921 | 2 | S2 | SSU rRNA | U | 1441 | OMU | 1442 | C | 1443 | U | 1444 | * | A | 1402 | A | 1405 | cSH | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCU*AAUA | 2 |
| U(OMU)CU*ACUA | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UC*AU | 2 |
| (OMU)C*CU | 2 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cSH-L-cWW
- Heat map statistics
- Min 0.07 | Avg 0.08 | Max 0.15
Coloring options: